PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0067s0121.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 535aa    MW: 57262.2 Da    PI: 7.3996
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0067s0121.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.5e-1199124126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ++++ C +++rtG C +G +C+F+H+
  Sphfalx0067s0121.1.p  99 PGEPDCGYYMRTGLCGFGISCRFNHP 124
                           5789*********************8 PP

2zf-CCCH37.63.7e-12151175226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           +++ C++f++tGtCk+G++Ck++H+
  Sphfalx0067s0121.1.p 151 GQPDCQYFLKTGTCKFGATCKYHHP 175
                           5799********************8 PP

3zf-CCCH38.51.9e-12199222427
                           ---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                           + C +++rtG CkyG +CkF+H++
  Sphfalx0067s0121.1.p 199 KDCAYYMRTGSCKYGVTCKFHHPQ 222
                           68********************97 PP

4zf-CCCH32.51.5e-10360386127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +++++C+++ +tG Ck+G +C+++H++
  Sphfalx0067s0121.1.p 360 PGQPECQYYIKTGDCKFGVTCRYHHPK 386
                           5789*********************96 PP

5zf-CCCH34.63.2e-11407431226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           + ++C+f+ r+G+Ck+G++CkF H+
  Sphfalx0067s0121.1.p 407 GSPPCNFYTRYGICKFGPTCKFDHP 431
                           679*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.9E-598125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.5398126IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8100124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-5103126IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-6149176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.385149177IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9152175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6153178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4155175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6194223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.573195223IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-5197222IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10199222IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-5201221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455359387IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-4359386IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-7361386IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5363388IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601405433IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6405432IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8407431IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5408433IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4410430IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MELYYGDPSP HVVGYASGVS ISSADWHRRQ QQQQQQQHHH RRRHHHGSSS SSSSSHVAAG  60
AAETAGLQER ILWRMTTLQQ PEEMDHGGGG PAASYPERPG EPDCGYYMRT GLCGFGISCR  120
FNHPSNGGNL AAALAAQGGS SRGGEYPERL GQPDCQYFLK TGTCKFGATC KYHHPSDKAG  180
SIGQVQINVL GFPLRLEEKD CAYYMRTGSC KYGVTCKFHH PQPAAMGALV SMSGSSLYAT  240
PATQSSSTPQ PYPAGLPSWP IAARAPYLQV PSTFAPVIVP PLQGVVSMTG WNTYQGPVNN  300
LPTPEEQQHS LGSRFPYGGL EMDAVSGYAP YIQGSSAMGL PVLQPQPIHV HKETVFPERP  360
GQPECQYYIK TGDCKFGVTC RYHHPKDRTT TAPTCVLNSL GLPLRPGSPP CNFYTRYGIC  420
KFGPTCKFDH PLRGLTYGSP ASLQTDIPVG GPYPSGSLLT VLTPSSSSEV PQEVSNTASP  480
SDEPASEEVS GCIPLRAIPD SAVMRTMAAS NLLAQGTRSE MAINSPATEI LDAS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001768387.11e-142predicted protein, partial
SwissprotQ9SWF91e-127ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA9SQ001e-142A9SQ00_PHYPA; Predicted protein (Fragment)
STRINGPP1S102_155V6.11e-147(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-104zinc finger protein 1